Registration Workshop Training

Educational Course NeuroImaging: Mapping the Function and Structure of Brain

About event

The course is focused mainly on master‘s and doctor‘s degree students in the field of human brain mapping regardless of primary background. However, any basic knowledge about brain mapping will be convenient. Attendants will obtain theoretical and practical skills in several neuroimaging techniques. 
Registration and a fee are required to participate in the course. The participation fee is included lunches and coffee breaks during the entire duration of the course. This event is free of charge for PhD students in the Neuroscience field at Masaryk University.

Please note that it is necessary to fill out the registration form and then make a purchase in the MUNI Shopping Center via the links below.

Payments

PhD students in the Neuroscience field at Masaryk University – the event is free of charge.

Students enrolled in other fields will have to pay a participation fee of 500 CZK or 22 EUR.
For payments in CZK click HERE.
For payments in EUR please click HERE.

Other staff will have to pay a participation fee of 1000 CZK or 43 EUR.
For payments in CZK click HERE.
For payments in EUR please click HERE.

Programme

An overview of the course schedule can be downloaded HERE.

Monday 11 November

8:30–9:15 Registration of participants
9:15–9:25 Introduction to the course (Michal Mikl)
9:25–10:15 Anatomical and physiological backgrounds to brain mapping (Robert Roman)
10:15–10:30 Coffee break
10:30–12:00 Overview of MRI principles for non-physicists (Zenon Starčuk)
12:00–13:00 Lunch
13:00–14:30 Electrophysiological methods in brain mapping
  • EEG data preprocessing (Martin Lamoš)
  • Analysis of EEG microstates (Tomáš Jordánek)
  • High-density EEG data analysis (Martin Lamoš)
14:30–14:45 Coffee break
14:45–15:45 fMRI basics
  • Principles of fMRI (Michal Mikl)
  • fMRI data preprocessing (Anežka Kovářová)
  • Statistical analysis of fMRI data (Martin Gajdoš)
15:45–16:00 Coffee break
16:00–16:45 fMRI advanced I
  • Resting-state fMRI studies and related methods(ICA, ALFF) (Michal Mikl)
  • Data quality issues in MRI/fMRI (Martin Gajdoš)
  • How to prepare acquisition of fMRI data (Michal Mikl)

Tuesday 12 November

9:00–10:00 Principles of DWI and fiber tracking (Lubomír Vojtíšek)
10:00–10:30 Morphometry – part I
  • Principles and methods of brain morphometry (Pavel Říha)
10:30–10:45 Coffee break
10:45–11:00 Morphometry – part II
  • Group analysis in morphometry and another advanced topics (Radek Mareček)
11:00–12:15 Electrophysiology and fMRI
  • Simultaneous EEG-fMRI (Radek Mareček)
  • SignalPlant - software for EEG data handling and deep learning (Filip Plešinger)
12:15–13:15 Lunch
13:15–15:00 Practical session in MRI labs
  • Placed at MAFIL labs (2nd underground floor)
  • Two parallel groups: A) simultaneous EEG-fMRI recording, B) advanced fMRI approaches and fMRI accessories
15:00–15:15 Coffee break
15:15–16:45 Advanced MRI/fMRI analysis and related topics
  • Overview of fMRI connectivity (Martin Gajdoš)
  • Dynamical signatures of resting state activity (Jan Fousek)
  • Basics of human brain perfusion imaging with ASL (Martin Gajdoš)
  • Special cases of fMRI: Dual fMRI, fMRI neurofeedback, … (Michal Mikl)

Wednesday 13 November

9:00–10:30 Noninvasive brain stimulation techniques
  • Transcranial magnetic stimulation- basic principles and applications (Luboš Brabenec)
  • Transcranial electric stimulation- basic principles and novel methods of NIBS (Monika Pupíková)
  • Combination of NIBS with other neuroimaging techniques (Ľubomíra Nováková)
10:30–10:45 Coffee break
10:45–11:30 Differences between animal and human studies. technical aspects of animal studies. Quantitative imaging, physiological models, and Perfusion (Ondřej Macíček)
11:30–12:15 Neuroimaging studies and data – practical aspects
  • Data workflow and data formats in neuroimaging. FAIR data, preparation of publicly available datasets (Tomáš Slavíček)
  • How to prepare and conduct neuroimaging study – practical hints (Michal Mikl)
12:15–13:15 Lunch
13:15–15:30 fMRI data processing with SPM – practical session
Introduction to SPM12 and preparation to data processing (Michal Mikl)
Processing of fMRI data in SPM12 with example dataset (Martin Gajdoš)
The registration for this event has already been closed.

Date

11. - 13. 11. 2024
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Organiser

CF: Multimodal and Functional Imaging Laboratory
CF: Multimodal and Functional Imaging Laboratory
CEITEC MU

Venue

CEITEC MU, University Campus, Building E35, Room 145